#!/bin/bash
set -e

pkg=fastq-pair
CUR_DIR=`pwd`

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a ${CUR_DIR}/"test" "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

echo "Test functionality"
fastq_pair -t 1000 "test"/left.fastq "test"/right.fastq
cd "test"
[ -s left.fastq.paired.fq ] || exit 1
[ -s left.fastq.single.fq ] || exit 1
[ -s right.fastq.paired.fq ] || exit 1
[ -s right.fastq.single.fq ] || exit 1
echo "PASS"
